PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han003143
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family ERF
Protein Properties Length: 218aa    MW: 24639.9 Da    PI: 10.2862
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-61545PU_refplantGDBView CDS
gnl|UG|Han#S48333732PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.3e-19115164255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++  +++++g
  Han003143 115 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDVEARRIRG 164
                6********.**********954...4**********************99997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.2E-33115173IPR001471AP2/ERF domain
CDDcd000183.77E-32115174No hitNo description
SMARTSM003803.9E-38115178IPR001471AP2/ERF domain
PROSITE profilePS5103224.052115172IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-22115173IPR016177DNA-binding domain
PfamPF008474.1E-12116164IPR001471AP2/ERF domain
PRINTSPR003674.6E-12116127IPR001471AP2/ERF domain
PRINTSPR003674.6E-12138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MCGGAIISDL IAPSVNKSRR LTAADLLLTQ SDFFKNPSKC YSKPLRSEIF DLEDEFEADF  60
RGFKDEVEAQ VEAEHRLNPY NFSASKGSAA SSRGSKSVKS DDVSEKSTSR KRKNQYRGIR  120
QRPWGKWAAE IRDPRKGVRV WLGTFNTAEE AARAYDVEAR RIRGDKAKVN FPDVPVNLNR  180
QKVNVKLNKK TTADCNGSFG YFEPKPQVTF PALLKIWV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A1e-21115172563ATERF1
2gcc_A1e-21115172563ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Han.3370.0embryo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016465672.15e-72PREDICTED: ethylene-responsive transcription factor RAP2-12-like
SwissprotP427365e-42RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
SwissprotQ9SSA88e-42RA212_ARATH; Ethylene-responsive transcription factor RAP2-12
TrEMBLA0A103YB323e-87A0A103YB32_CYNCS; AP2/ERF domain-containing protein
STRINGPGSC0003DMT4000236099e-65(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.15e-39ethylene-responsive element binding protein